Distribution of aminoglycoside-modifying enzyme genes in Escherichia coli isolated from urinary tract infections

Authors

  • Amirreza Larijani Student Research Committee, Babol University of Medical Sciences, Babol, Iran
  • Mohsen Mohammadi Non-Communicable Pediatric Diseases Research Center, Health Research Institute, Babol University of Medical Sciences, Babol, Iran
  • Zahra Asadi Student Research Committee, Babol University of Medical Sciences, Babol, Iran
  • Hadi Sourkhi Non-Communicable Pediatric Diseases Research Center, Health Research Institute, Babol University of Medical Sciences, Babol, Iran
  • Mehrdad Halaji Infectious Diseases and Tropical Medicine Research Center, Health Research Institute, Babol University of Medical Sciences, Babol, Iran https://orcid.org/0000-0002-4576-8203

DOI:

https://doi.org/10.66224/jcbior.7.1.341

Keywords:

Escherichia coli, Urinary tract infection, Aminoglycosides, Antimicrobial resistance

Abstract

Urinary tract infections (UTIs) are among the most common bacterial infections worldwide. Escherichia coli is responsible for more than 80% of community- and hospital-acquired UTIs. Aminoglycosides are widely used as first-line therapy for severe Gram-negative infections, but antimicrobial resistance particularly through aminoglycoside-modifying enzymes (AMEs) threatens treatment success. The aim of this study was to investigate the relationship between aminoglycoside resistance and the prevalence of genes encoding modifying enzymes in Escherichia coli isolates obtained from urinary tract infections. This cross-sectional study was performed at Babol University of Medical Science. A total of 178 E. coli isolates were collected from urine samples of UTI patients. Antimicrobial susceptibility testing was performed according to CLSI guidelines, and the presence of AME-encoding resistance genes (aac(6')-Ib-cr, aadA1, aphA1, aph(6), Aph(6'-VI) was examined using PCR. Overall, 71% of isolates were from females and 29% from males; 57% were obtained from children and 43% from adults. Phenotypic results showed high susceptibility to gentamicin (78%) and amikacin (75%), while resistance was 20.8% and 18%, respectively. The most frequent AME gene was aac(6')-Ib-cr (37%), followed by aphA1 (15%) and aadA1 (14%). Statistical analysis showed a significant association only between aphA1 and gentamicin resistance. Although aminoglycoside susceptibility remains high, AME genes are already disseminating among uropathogenic E. coli, indicating the risk of future resistance expansion. Phenotypic and genetic data provide valuable guidance for treatment and resistance monitoring.

References

1. Brenner DJ, Boone DR, Garrity GM, Goodfellow M, Krieg NR, Rainey FA, et al. The proteobacteria: part C: the alpha-, beta-, delta-, and epsilonproteobacteria. Athens, GA, USA: Bergey's Manual Trust; 2005.

URL: https://library.wur.nl/WebQuery/titel/1779821

2. Holmbom M, Möller V, Kristinsdottir L, Nilsson M, Rashid MU, Fredrikson M, et al. Risk factors and outcome due to extended-spectrum β-lactamase-producing uropathogenic Escherichia coli in community-onset bloodstream infections: A ten-year cohort study in Sweden. PLoS One. 2022;17(11):e0277054.

DOI: 10.1371/journal.pone.0277054 PMID: 36327255

3. Ruppé E, Hem S, Lath S, Gautier V, Ariey F, Sarthou JL, et al. CTX-M beta-lactamases in Escherichia coli from community-acquired urinary tract infections, Cambodia. Emerg Infect Dis. 2009;15(5):741-8.

DOI: 10.3201/eid1505.071299 PMID: 19402960

4. Mainil J. Escherichia coli virulence factors. Vet Immunol Immunopathol. 2013;152(1-2):2-12.

DOI: 10.1016/j.vetimm.2012.09.032 PMID: 23083938

5. Jouini A, Vinué L, Slama KB, Sáenz Y, Klibi N, Hammami S, et al. Characterization of CTX-M and SHV extended-spectrum beta-lactamases and associated resistance genes in Escherichia coli strains of food samples in Tunisia. J Antimicrob Chemother. 2007;60(5):1137-41.

DOI: 10.1093/jac/dkm316 PMID: 17855726

6. Talieh Mostaghimi, Pournajaf A, Bijani A, Mohammadi M, Rajabnia M, Halaji M. Phylogenetic analysis, biofilm formation, antimicrobial resistance and relationship between these characteristics in Uropathogenic Escherichia coli. Mol Biol Rep. 2024;51(1):327.

DOI: 10.1007/s11033-023-09031-x PMID: 38393446

7. Wayne P. Clinical and Laboratory Standards Institute: Performance standards for antimicrobial susceptibility testing: 20th informational supplement. CLSI document M100-S20. 2010. URL: https://clsi.org/shop/standards/m100/

8. Abdelrahim SS, Fouad M, Abdallah N, Ahmed RF, Zaki S. Comparative Study of CTX-M-15 Producing Escherichia coli ST131 Clone Isolated from Urinary Tract Infections and Acute Diarrhoea. Infect Drug Resist. 2021;14:4027-4038.

DOI: 10.2147/IDR.S325669 PMID: 34616160

9. Passadouro R, Fonseca R, Figueiredo F, Lopes A, Fernandes C. Avaliação do Perfil de Sensibilidade aos Antibióticos na Infeção Urinária da Comunidade. Acta Med Port. 2014;27(6):737-42. PMID: 25641289

10. Gold HS, Moellering RC Jr. Antimicrobial-drug resistance. N Engl J Med. 1996;335(19):1445-53.

DOI: 10.1056/NEJM199611073351907 PMID: 8875923

11. Abo-State MA, Saleh YE, Ghareeb HM. Prevalence and sequence of aminoglycosides modifying enzymes genes among E. coli and Klebsiella species isolated from Egyptian hospitals. J Radiat Res Appl Sci. 2018;11(4):408-15. DOI: 10.1016/j.jrras.2018.08.005

12. Soleimani N, Aganj M, Ali L, Shokoohizadeh L, Sakinc T. Frequency distribution of genes encoding aminoglycoside modifying enzymes in uropathogenic E. coli isolated from Iranian hospital. BMC Res Notes. 2014;7:842.

DOI: 10.1186/1756-0500-7-842 PMID: 25424607

13. Ghotaslou R, Sadeghi MR, Akhi MT, Hasani A, Asgharzadeh M. Prevalence and Antimicrobial Susceptibility Patterns of ESBL, AmpC and Carbapenemase-producing Enterobactericeae Isolated from Hospitalized Patients in Azerbaijan, Iran. Iran J Pharm Res. 2018;17(Suppl):79-88. PMID: 29796032

14. Hemati S, Shams M, Rahmatian A, Nourmohammadi H, Abdoli A, Maleki F, et al. The patterns of aminoglycoside and fluoroquinolones resistance among uropathogenic Escherichia coli isolates. J Basic Res Med Sci. 2020;7(2):7-12.

URL: https://www.researchgate.net/publication/343040899

15. Ghamari M, Emaneini M, Hemmati S, Jabalameli F, Beigverdi R. Phenotypic and genotypic evaluation of aminoglycoside resistance in Escherichia coli isolated from patients with blood stream infections in Tehran, Iran. Iran J Microbiol. 2024;16(2):187-192.

DOI: 10.18502/ijm.v16i2.15351 PMID: 38854982

16. Soleimani N, Derakhshan S, Memariani M. Plasmid Profile Analysis of Aminoglycoside-Resistant Escherichia coli Isolated from Urinary Tract Infections. Int J Enteric Pathog. 2016;4(2):e33806. DOI: 10.17795/IJEP33806

17. Akrami S, Khoshnood S, Koupaei M, Abbasi Montazeri E, Meghdadi H, et al. Molecular Evaluation of Aminoglycoside Resistance and Biofilm Formation Potential in Escherichia coli Isolates Collected from Hospitalized Patients. Jundishapur J Microbiol. 2024;17(6):e148101. DOI: 10.5812/jjm-148101

18. Shi Y, Li C, Yang G, Xia X, Mao X, Fang Y, et al. A rapid and accurate method for the detection of four aminoglycoside modifying enzyme drug resistance gene in clinical strains of Escherichia coli by a multiplex polymerase chain reaction. PeerJ. 2020;8:e8944. DOI: 10.7717/peerj.8944 PMID: 32309051

19. Lynne AM, Rhodes-Clark BS, Bliven K, Zhao S, Foley SL. Antimicrobial resistance genes associated with Salmonella enterica serovar newport isolates from food animals. Antimicrob Agents Chemother. 2008;52(1):353-6.

DOI: 10.1128/AAC.00842-07 PMID: 17967918

20. Asadollahi P, Akbari M, Soroush S, Taherikalani M, Asadollahi K, Sayehmiri K, et al. Antimicrobial resistance patterns and their encoding genes among Acinetobacter baumannii strains isolated from burned patients. Burns. 2012;38(8):1198-203.

DOI: 10.1016/j.burns.2012.04.008 PMID: 22579564

21. van Overbeek LS, Wellington EM, Egan S, Smalla K, Heuer H, Collard JM, et al. Prevalence of streptomycin-resistance genes in bacterial populations in European habitats. FEMS Microbiol Ecol. 2002;42(2):277-88.

DOI: 10.1111/j.1574-6941.2002.tb01018.x PMID: 19709288

22. Mosavat A, Soleimanpour S, Farsiani H, Salimizand H, Kebriaei A, et al. Moderate Genetic Diversity with Extensive Antimicrobial Resistance Among Multidrug-Resistant Acinetobacter baumannii in a Referral Hospital in Northeast Iran. Jundishapur J Microbiol. 2018;11(7):e14412.

DOI: 10.5812/jjm.14412

23. Ben Yahia H, Ben Sallem R, Tayh G, Klibi N, Ben Amor I, Gharsa H, et al. Detection of CTX-M-15 harboring Escherichia coli isolated from wild birds in Tunisia. BMC Microbiol. 2018;18(1):26.

DOI: 10.1186/s12866-018-1163-2 PMID: 29609544

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Published

2026-03-30

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Original articles

How to Cite

Distribution of aminoglycoside-modifying enzyme genes in Escherichia coli isolated from urinary tract infections. (2026). Journal of Current Biomedical Reports, 7(1). https://doi.org/10.66224/jcbior.7.1.341

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